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Papers from 2013

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A simple method for air/sea gas exchange measurement in mesocosms and its application in carbon budgeting, J Czerny, Kai G. Schulz, A Ludwig, and U Riebesell

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Polychaete richness and abundance enhanced in anthropogenically modified estuaries despite high concentrations of toxic contaminants, Katherine A. Dafforn, Brendan P. Kelaher, Stuart L. Simpson, Melinda A. Coleman, Pat A. Hutchings, Graeme F. Clark, Nathan A. Knott, Martina A. Doblin, and Emma L. Johnston

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Spatial and temporal patterns of eastern Australia subtropical coral communities, Steven James Dalton and George Roff

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Immunological changes in response to herpesvirus infection in abalone Haliotis laevigata and Haliotis rubra hybrids, Vinh T. Dang, Kirsten Benkendorff, Serge Corbeil, Lynette M. Williams, John Hoad, Mark St J Crane, and Peter Speck

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Complex responses of intertidal molluscan embryos to a warming and acidifying ocean in the presence of UV radiation, Andrew R. Davis, Daniel Coleman, Allison Broad, Maria Byrne, Symon Dworjanyn, and Rachel Przeslawski

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A 13C labelling study on carbon fluxes in Arctic plankton communities under elevated CO2 levels, A de Kluijver, K Soetaert, J Czerny, Kai G. Schulz, T Boxhammer, U Riebesell, and J J. Middelburg

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Air blasting as the optimal approach for the extraction of antioxidants in coral tissue, Elisabeth SM Deschaseaux, Myrna A. Deseo, Kellie M. Shepherd, Graham B. Jones, and Peter Lynton Harrison

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Seasonal variation in the effects of ocean warming and acidification on a native bryozoan, Celleporaria nodulosa, Halley MS Durrant, Graeme F. Clark, Symon A. Dworjanyn, Maria Byrne, and Emma L. Johnston

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Biases in volume increment estimates derived from successive angle count sampling, Chris S. Eastaugh and Hubert Hasenauer

Scaling issues and constraints in modelling of forest ecosystems: a review with special focus on user needs, Chris S. Eastaugh, A Kangur, H Korjus, A Kiviste, T Zlatanov, I Velichkov, B Srdjevic, Z Srdjevic, and H Hasenauer

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CO2 increases 14C-primary production in an Arctic plankton community, A Engel, C Borchard, J Piontek, Kai G. Schulz, U Riebesell, and R Bellerby

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Denitrification, anammox and nitrate reduction in the sediments of the Southern Great Barrier Reef Lagoon, Dirk V. Erler, Lindsay A. Trott, Daniel M. Alongi, and Bradley D. Eyre

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Quantity and quality of organic matter (detritus) drives N2 effluxes (net denitrification) across seasons, benthic habitats, and estuaries, Bradley D. Eyre, Damien T. Maher, and Peter Squire

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Seasonal, daily and diel N2 effluxes in permeable carbonate sediments, Bradley D. Eyre, Isaac R. Santos, and Damien T. Maher

Southern Caribbean Sea temperature and salinity variability since the mid-Holocene from monthly resolved coral records, Thomas Felis, Cyril Giry, Martin Kolling, Denis Scholz, Wei Wei, Gerrit Lohmann, and Sander Scheffers

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Interaction of benthic microalgae and macrofauna in the control of benthic metabolism, nutrient fluxes and denitrification in a shallow sub-tropical coastal embayment (western Moreton Bay, Australia), Angus JP Ferguson and Bradley D. Eyre

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Four new Arthoniomycetes from Bwindi Impenetrable National Pary, Uganda - supported by moecular data, Andreas Frisch, Goran Thor, and Douglas Sheil

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Spatial and social sexual segregation patterns in Indo-Pacific bottlenose dolphins (Tursiops aduncus), Christine Ann Fury, Kathreen E. Ruckstuhl, and Peter Lynton Harrison

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Conservation in a wicked complex world: challenges and solutions, Edward Game, Erik Meijaard, Douglas Sheil, and Eve McDonald-Madden

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Reconciling forest conservation and logging in Indonesian Borneo, David LA Gaveau, Mrigesh Kshatriya, Douglas Sheil, Sean Sloan, Elis Molidena, Arief Wijaya, Serge Wich, Marc Ancrenaz, Matthew Hansen, Mark Broich, Manual R. Guariguata, Pablo Pacheco, Peter Potapov, Svetlana Turubanova, and Erik Meijaard

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Novel methods predict equilibrium vapor methanol content during gas hydrate inhibition, Mohammad M. Ghiasi, Alireza Bahadori, Sohrab Zendehboudi, Ahmad Jamili, and Sina Rezaei-Gomari

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Research article: small-scale spatial variation of δ13C and δ15N isotopes in Antarctic carbon sources and consumers, Christopher L. Gillies, Jonathan S. Stark, and Stephen DA Smith

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Establishing a food web model for coastal Antarctic benthic communities: a case study from the Vestfold Hills, C L. Gillies, J S. Stark, G L. Johnstone, and Stephen DA Smith

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Plant functional types and traits as biodiversity indicators for tropical forests: two biogeographically separated case studies including birds, mammals and termites, Andrew N. Gillison, David E. Bignell, Kenneth RW Brewer, Erick CM Fernandes, David T. Jones, Douglas Sheil, Peter H. May, Allan D. Watt, Reginaldo Constantino, Eduardo G. Couto, Kurniatun Hairiah, Paul Jepson, Agus P. Kartono, Ibnu Maryanto, Germano G. Neto, Meine van Noordwijk, Elton A. Silveira, Francis-Xavier Susilo, Stephen A. Vosti, and Paulo C. Nunes

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Controls of Caribbean surface hydrology during the mid- to late holocene: insights from monthly resolved coral records, Cyril Giry, Thomas Felis, Martin Koelling, Wei Wei, Gerrit Lohmann, and Sander Scheffers

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Groundwater-surface water exchange in a mangrove tidal creek: evidence from natural geochemical tracers and implications for nutrient budgets, Justin Gleeson, Isaac R. Santos, Damien T. Maher, and Lindsay Golsby-Smith

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Will arboreal mammals use rope-bridges across a highway in eastern Australia?, Ross L. Goldingay, David Rohweder, and Brendan Dominic Taylor

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Fillet yield, biochemical composition and consumer acceptance of farmed and wild mulloway, Jeffrey A. Guy and Stephen Nottingham

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Hydrologic fragmentation-induced eutrophication in Dove Sound, Upper Florida Keys, USA, Thomas S. Harmon, Joseph M. Smoak, Matthew N. Waters, and Christian J. Sanders

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Inventory procedures for smallholder and community woodlots in the Philippines: methods initial findings and insights, John L. Herbohn, Jerome K. Vanclay, H Ngyuen, H D. Le, J Baynes, S R. Harrison, E Cedamon, C Smith, J Firn, N O. Gregorio, E Mangaoang, and E Lamarre

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Using a balanced scorecard to improve the management of natural resources: experiences from Baden-Wurttemberg, Kathleen Herbohn, John Herbohn, Cristoph Hartebrodt, and Carl Smith

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Comparing simulations of three conceptually different forest models with National Forest Inventory data, Markus O. Huber, Chris S. Eastaugh, Thomas Gschwantner, Hubert Hasenauer, Georg Kindermann, Thomas Ledermann, Manfred J. Lexer, Werner Rammer, Stefan Schorghuber, and Hubert Sterba

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Detailed protocol for an accurate non-destructive direct dating of tooth enamel fragment using electron spin resonance, Renaud Joannes-Boyau

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Marine biology: coral animals combat stress with sulphur, Graham B. Jones

Anchorage devices used to improve the performance of concrete structures retrofitted with FRP composites: a state-of-the-art review, R Kalfat, R Al-Mahaidi, and Scott T. Smith

Detrital diversity influences estuarine ecosystem performance, Brendan P. Kelaher, Melanie J. Bishop, Jaimie Potts, Peter Scanes, and Greg Skilbeck

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Detrital diversity influences estuarine ecosystem performance, Brendan P. Kelaher, Melanie J. Bishop, Jamie Potts, Peter Scanes, and Greg Skilbeck

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Positive responses of a seagrass ecosystem to experimental nutrient enrichment, Brendan P. Kelaher, James Van Den Broek, Paul H. York, Melanie J. Bishop, and David J. Booth

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Biodiversity state and trends in Southeast Asia, Lian P Koh, Chris J. Kettle, Douglas Sheil, Tien M Lee, Xingli Giam, Luke Gibson, and Gopalasamy R Clements

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Effects of growth form and functional traits on response of woody plants to clearing and fragmentation of subtropical rainforest, R R. Kooyman, A E. Zanne, R V. Gallagher, W Cornwell, M Rossetto, P O'Connor, E A. Parkes, Claudia Frances Catterall, S W. Laffan, and C H. Lusk

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Estimates of soil carbon concentration in tropical and temperate forest and woodland from available GIS data on three continents, Brenton Ladd, Shawn W. Laffan, Wulf Amelung, Pablo L. Peri, Lucas CR Silva, Pina Gervassi, Stephen P. Bonser, Marcelo Navall, and Douglas Sheil

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Suppressive subtractive hybridisation transcriptomics provides a novel insight into the functional role of the hypobranchial gland in a marine mollusc, Patrick W. Laffy, Kirsten Benkendorff, and Catherine A. Abbott

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A review of Australia's natural gas resources and their exploitation, Daniel TB Leather, Alireza Bahadori, Chikezie Nwaoha, and David A. Wood

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Damage and physiological stress to juvenile eastern rock lobster (Sagmariasus verreauxi) discarded after trapping and hand collection, Jesse C. Leland, Paul A. Butcher, Matt K. Broadhurst, Brian D. Paterson, and David G. Mayer

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Relative trap efficiency for recreationally caught eastern Australian blue swimmer crab (Portunus pelagicus) and associated injury and mortality of discards, Jesse C. Leland, Paul A. Butcher, Matt K. Broadhurst, Brian D. Paterson, and David G. Mayer

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Above-ground biomass and structure of 260 African tropical forests, Simon L. Lewis, Bonaventure Sonké, Terry Sunderland, Serge K. Begne, Gabriela Lopez-Gonzalez, Geertje MF van der Heijden, Oliver L. Phillips, Kofi Affum-Baffoe, Timothy R. Baker, Lindsay Banin, Jean-François Bastin, Hans Beeckman, Pascal Boeckx, Jan Bogaert, Charles De Canniere, Eric Chezeaux, Connie J. Clark, Murray Collins, Gloria Djagbletey, Marie Noël K. Djuikouo, Vincent Droissart, Jean-Louise Doucet, Cornielle EN Ewango, Sophie Fauset, Ted R. Feldpausch, Ernest G. Foil, Jean-François Gillet, Alan C. Hamilton, David J. Harris, Terese B. Hart, Thales de Haulleville, Annette Hladik, Koen Hufkens, Dries Huygens, Philippe Jeanmart, Kathryn J. Jeffery, Elizabeth Kearsley, Miguel E. Leal, Jon Lloyd, Jon C. Lovett, Jean-Remy Makana, Yadvinder Malhi, Andrew R. Marshall, Lucas Ojo, Kelvin Peh, Georgia Pickavance, John R. Poulsen, Jan M. Reitsma, Douglas Sheil, Murielle Simo, Kathy Steppe, Hermann E. Taedoumg, Joey Talbot, James RD Taplin, David Taylor, Sean C. Thomas, Benjamin Toirambe, Hans Verbeeck, Jason Vleminckx, Lee JT White, Simon Willcock, Hannsjorg Woell, and Lise Zemagho

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A preliminary investigation of diversity, abundance, and distributional patterns of chitons in intertidal boulder-fields of differing rock type in South Australia, Kiran Liversage and Kirsten Benkendorff

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An exploration of the role of schema theory and the (non-indigenous) construction of indigenous identity, David J. Lloyd and William E. Boyd

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Community perspectives of natural resource extraction: coal-seam gas mining and social identity in Eastern Australia, David J. Lloyd, Hanabeth Luke, and William E. Boyd

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Relationship between diatoms and water quality (TN, TP) in sub-tropical east Australian estuaries, Brendan Logan and Kathryn H. Taffs

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Developing the Lismore CSG poll- a university/local government collaboration, Hanabeth Luke, Kristin A. den Exter, William E. Boyd, David J. Lloyd, and Ben Roche

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Groundwater-derived dissolved inorganic and organic carbon exports from a mangrove tidal creek: the missing mangrove carbon sink?, Damien T. Maher, Isaac R. Santos, L Golsby-Smith, J Gleeson, and Bradley D. Eyre

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Novel use of cavity ring-down spectroscopy to investigate aquatic carbon cycling from microbial to ecosystem scales, Damien T. Maher, Isaac R. Santos, Jasper RFW Leuven, Joanne M. Oakes, Dirk V. Erler, Matheus Carvalho de Carvalho, and Bradley D. Eyre

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The key physical parameters governing frictional dissipation in a precipitating atmosphere, A M. Makarieva, V G. Gorshkov, A V. Nefiodov, Douglas Sheil, A D. Nobre, P Bunyard, and B-L Li

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Why does air passage over forest yield more rain? examining the coupling between rainfall, pressure and atmospheric moisture content, A M. Makarieva, V G. Gorshkov, Douglas Sheil, A D. Nobre, P Bunyard, and B-L Li

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Where do winds come from? a new theory on how water vapor condensation influences atmospheric pressure and dynamics, AM Makarieva, VG Gorshkov, Douglas Sheil, AD Nobre, and B-L Li

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Recent mercury contamination from artisanal gold mining on Buru Island, Indonesia – potential future risks to environmental health and food safety, Yusthinus T. Male, Amanda J. Reichelt-Brushett, Matt Pocock, and Albert Nanlohy

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Species-site matching in mixed species plantations of native trees in tropical Australia, Daniel G. Manson, Susanne Schmidt, Mila Bristow, Peter D. Erskine, and Jerome K. Vanclay

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Restoring seaweeds: does the declining fucoid Phyllospora comosa support different biodiversity than other habitats?, E M. Marzinelli, A H. Campbell, A Vergés, M A. Coleman, Brendan P. Kelaher, and P D. Steinberg

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Hysteresis between coral reef calcification and the seawater aragonite saturation state, Ashly McMahon, Isaac R. Santos, Tyler Cyronak, and Bradley D. Eyre

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Stockplan- exploring management options before dry spells and in drought: 1. development and description, M J. McPhee, Michael B. Whelan, B L. Davies, G P. Meaker, P Graham, and P M. Carberry

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Oil-palm plantations in the context of biodiversity conservation, Erik Meijaard and Douglas Sheil

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A camera trap assessment of terrestrial vertebrates in Bwindi Impenetrable National Park, Uganda, Badru Mugerwa, Douglas Sheil, Peter Ssekiranda, Miriam van Heist, and Pontious Ezuma

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Preliminary carbon sequestration modelling for the Australian macadamia industry, Tim Murphy, Graham B. Jones, Jerome K. Vanclay, and Kevin Glencross

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Population recovery following decline in an endangered stream-breeding frog (mixophyes fleayi) from subtropical Australia, David A. Newell, Ross L. Goldingay, and Lyndon O. Brooks

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Improved silvicultural management of Endospermum medullosum (whitewood) for enhanced plantation forestry outcomes in Vanuatu, J Doland Nichols, Kevin S. Glencross, John C. Grant, Graeme Palmer, Graeme Browne, R Geoff B. Smith, M Sethy, and R Viranamangga

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Growth, settlement and survival of Dicathais orbita (Neogastropoda, Mollusca) larvae in response to temperature, diet and settlement cues, Warick J. Noble, Kirsten Benkendorff, and James O. Harris

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Genetic diversity and differentiation among high-latitude broadcast-spawning coral populations disjunct from the core range, Annika ME Noreen, Madeleine JH van Oppen, and Peter Lynton Harrison

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Processing of particulate organic carbon associated with secondary-treated pulp and paper mill effluent in intertidal sediments: a 13C pulse-chase experiment, Joanne M. Oakes, Donald Ross, and Bradley D. Eyre

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Accessing local knowledge to identify where species of conservation concern occur in a tropical forest landscape, Michael Padmanaba, Douglas Sheil, Imam Basuki, and Nining Liswanti

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Australian land snails: a review of ecological research and conservation approaches, Jonathon Parkyn and David A. Newell

The role of sewage effluent in maintaining the productivity of wader feeding areas near the Western Treatment Plant, G D. Parry, Joanne Margaret Oakes, and C A. White

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Impacts of near future sea surface pH and temperature conditions on fertilisation and embryonic development in Centrostephanus rodgersii from northern New Zealand and northern New South Wales Australia, D Pecorino, M F. Barker, Symon A. Dworjanyn, M Byrne, and M D. Lamare

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Tracking suspended particle transport via radium isotopes (226Ra and 228Ra) through the Apalachicola-Chattahoochee-Flint River system, Richard N. Peterson, William C. Burnett, Stephen P. Opsahi, Isaac R. Santos, Sambuddha Misra, and Philip N. Froelich

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Symbiodinium diversity in the sea anemone Entacmaea quadricolor on the east Australian coast, S Pontasch, Anna Scott, R Hill, T Bridge, P L. Fisher, and S K. Davy

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Direct and indirect effects of ocean acidification and warming on a marine plant–herbivore interaction, Alistair GB Poore, Alexia Graba-Landry, Margaux Favret, Hannah Sheppard Brennand, Maria Byrne, and Symon A. Dworjanyn

The CABI encyclopedia of forest trees, Andrew Praciak, Nick Pasiecznik, Douglas Sheil, Miriam van Heist, Marieke Sassen, Cristina Sousa Correia, Christopher Dixon, George Fyson, Keith Rushforth, and Claire Teeling

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Increasing the value of sea cucumber harvests by improving postharvest processing of fishers, Steven W. Purcell

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Optimisation of mesh enclosures for nursery rearing of juvenile sea cucumbers, Steven W. Purcell and Natacha S. Agudo

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Constraints and solutions for managing Pacific Island sea cucumber fisheries with an ecosystem approach, Steven W. Purcell, Alessandro Lovatelli, and K Pakoa

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Sea cucumber fisheries: global analysis of stocks, management measures and drivers of overfishing, Steven W. Purcell, Annie Mercier, Chantal Conand, Jean-François Hamel, M Verónica Toral-Granda, Alessandro Lovatelli, and Sven Uthicke

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A more realistic portrayal of tropical forestry: response to Kormos and Zimmerman, Francis E. Putz, Pieter A. Zuidema, Timothy Synnott, Marielos Peña-Claros, Michelle A. Pinard, Douglas Sheil, Jerome K. Vanclay, Plinio Sist, Sylvie Gourlet-Fleury, John Palmer, Roderick Zagt, and Bronson Griscom

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Pseudoreplication in tropical forests and the resulting effects on biodiversity conservation, Benjamin S. Ramage, Douglas Sheil, Hannah MW Salim, Christine Fletcher, Nur-Zatia Mustafa, Joann C. Luruthusamay, Rhett D. Harrison, Elizabeth Butod, Ahmad Dzamir Dzulkiply, Abd Rahman Kassim, and Matthew D. Potts

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A mobile sea-going mesocosm system – new opportunities for ocean change research, U Riebesell, J Czerny, K von Brockel, T Boxhammer, J Budenbender, M Deckelnick, M Fischer, D Hoffmann, S A. Krug, U Lentz, A Ludwig, R Muche, and Kai G. Schulz

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Does nest box design influence use by the eastern pygmy-possum, Niels N. Rueegger, Ross L. Goldingay, and Lyndon O. Brooks

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A review of mangrove and seagrass ecosystems and their linkage to fisheries and fisheries management, Peter Saenger, Donald Gartside, and S Funge-Smith

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Rare earth element and radionuclide distribution in surface sediments along an estuarine system affected by fertilizer industry contamination, L M. Sanders, W Luiz-Silva, W Machado, Christian J. Sanders, H Marotta, A Enrich-Prast, A Bosco-Santos, A Boden, E V. Silva-Filho, Isaac R. Santos, and S R. Patchineelam

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The contribution of groundwater discharge to nutrient exports from a coastal catchment: post flood seepage increases estuarine N/P ratios, Isaac R. Santos, Jason de Weys, Douglas R. Tait, and Bradley D. Eyre

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Human impacts on forest structure and species richness on the edges of a protected mountain forest in Uganda, Marieke Sassen and Douglas Sheil

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Complex contexts and dynamic drivers: understanding four decades of forest loss and recovery in an East African protected area, Marieke Sassen, Douglas Sheil, Ken E. Giller, and Cajo JF ter Braak

Introduction: forests, landscapes and conservation, Jeffrey Sayer and Douglas Sheil

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Ten principles for a landscape approach to reconciling agriculture, conservation, and other competing land uses, Jeffrey Sayer, Terry Sunderland, Jaboury Ghazoul, Jean-Laurent Pfund, Douglas Sheil, Erik Meijaard, Michelle Venter, Agni Klintuni Boedhihartono, Michael Day, Claude Garcia, Cora van Oosten, and Louise E. Buck

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Potential and limits of combining studies of coarse- and fine-grained sediments for the coastal event history of a Caribbean carbonate environment, Anja M. Scheffers, Max Engel, S Matthias May, Sander Scheffers, Renaud Joannes-Boyau, Elke Hanssler, Katharina Kennedy, Dieter Kelletat, Helmut Bruckner, Andreas Vott, Gerhard Schellmann, Frank Schabitz, Ulrich Radtke, Brigitte Sommer, Timo Willershauser, and Thomas Felis

Corcoracidae Mathews, 1927 (Aves) and the spelling melanorhamphos Vieillot, 1817 for the valid name of the type species of its type genus: proposed conservation of usage, R Schodde, W Boles, Leslie Christidis, P Horton, R Johnstone, L Joseph, and W Longmore

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Temporal biomass dynamics of an Arctic plankton bloom in response to increasing levels of atmospheric carbon dioxide, Kai G. Schulz, R GJ Bellerby, C PD Brussaard, J Budenbender, J Czerny, A Engel, M Fischer, S Koch-Klavsen, S A. Krug, S Lischka, A Ludwig, M Meyerhofer, G Nondal, A Silyakova, A Stuhr, and U Riebesell

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Diurnal changes in seawater carbonate chemistry speciation at increasing atmospheric carbon dioxide, Kai G. Schulz and U Riebesell

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Reduced salinity decreases the fertilization success and larval survival of two scleractinian coral species, Anna Scott, Peter Lynton Harrison, and Lyndon O. Brooks

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Scaling issues in forest ecosystem management and how to address them with models, Rupert Seidl, Chris S. Eastaugh, Koen Kramer, Michael Maroschek, Christopher PO Reyer, Jaroslaw Socha, Giorgio Vacchiano, Tzvetan M. Zlatanov, and Hubert Hasenauer

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Feeding preference and performance in the tropical sea urchin Tripneustes gratilla, Scott Seymour, Nicholas A. Paul, Symon Dworjanyn, and Rocky de Nys

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Defining and defending Connell's intermediate disturbance hypothesis: a response to Fox, Douglas Sheil and David FRP Burslem