Title

Genome-wide identification and classification of the AP2/EREBP gene family in the Cucurbitaceae species

Document Type

Article

Publication details

Lee, SC, Lee, WK, Ali, A, Kumar, M, Yang, TJ & Song, K 2017, 'Genome-wide identification and classification of the AP2/EREBP gene family in the Cucurbitaceae species', Plant Breeding and Biotechnology, vol. 5, no. 2, pp. 123-133.

Article available on Open Access

Abstract

AP2/EREBP gene family consists of transcription factor genes with a conserved AP2 DNA-binding domain and is involved in various biological processes. AP2/EREBP gene families were identified through genome-wide searches in five Cucurbitaceae species including cucumber, wild cucumber, melon, watermelon, and bitter gourd, which consisted of more than 100 genes in each of the five species. The gene families were further divided into five groups including four subfamilies (ERF, DREB, AP2 and RAV) and a soloist group. Among the subfamilies, DREB subfamily which is known to be related to abiotic stress response was more analyzed and a total of 25 genes were identified as Cucurbitaceae homologues of Arabidopsis CBF/DREB1 genes which are important for abiotic stress-response and tolerance. In silico expression profiling using RNA-Seq data revealed diverse expression patterns of cucumber AP2/EREBP genes. AP2/EREBP gene families identified in this study will be valuable for understanding the stress response mechanism as well as facilitating molecular breeding in Cucurbitaceae crops.