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Papers from 2008

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Differential LongSAGE tag abundance analysis in a barley seed germination time course and validation with relative real-time RT-PCR, Jessica F. White, Toni Pacey-Miller, Peter C. Bundock, and Robert J. Henry

2008 Plant Science 175:5 858-867.

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Dioscorea villosa (wild yam) induces chronic kidney injury via pro-fibrotic pathways, Ken Wojcikowski, Hans Wohlmuth, David W. Johnson, and Glenda Gobe

2008 Food and Chemical Toxicology 46:9 3122-3131.

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Volatile chemical constituents of three Ocimum species (Lamiaceae) from Papua New Guinea (SPJNS), Stewart W. Wossa, Topul Rali, and David N. Leach

2008 The South Pacific Journal of Natural Science 26:1 25-27.

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The Arabidopsis cax3 mutants display altered salt tolerance, pH sensitivity and reduced plasma membrane H+-ATPase activity, Jian Zhao, Bronwyn J. Barkla, Joy Marshall, Jon K. Pittman, and Kendal D. Hirschi

2008 Planta 227:3 659-669.

Papers from 2007

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New pseudan (2-alkyl-4(1H)-quinolinone) alkaloids from Boronia ternata var. elongata and Boronia alulata (Rutaceae), Catherine Agier, Michele Bury, Jacqueline Aquette, Reynald Hocquemiller, and Peter G. Waterman

2007 Natural Product Communications 21:8 698-703.

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Simple sequence repeats reveal uneven distribution of genetic diversity in chloroplast genomes of Brassica oleracea L. and (n=9) wild relatives, C J. Allender, J Allainguillaume, J Lynn, and Graham J. King

2007 Theoretical and Applied Genetics 114:4 609-618.

Steroid hormones in the tear film, Linda K. Banbury, Lakkis C, and Carol A. Morris

2007 Tear Film and Ocular Surfact Society (TFOS) Conference.

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Novel insights into seed fatty acid synthesis and modification pathways from genetic diversity and quantitative trait loci analysis of the Brassica C genome, G C. Barker, T R. Larson, I A. Graham, J R. Lynn, and G J. King

2007 Plant Physiology 144:4 1827-1842.

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Enhanced separation of membranes during free flow zonal electrophoresis in plants, Bronwyn J. Barkla, R Vera-Estrella, and O Pantoja

2007 Analytical Chemistry 79:14 5181-5187.

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Biological sequence data preprocessing for classification: a case study in splice site identification, Abdul KMA Baten, S K. Halgamuge, Bill Chang, and Nalin Wickrmarachchi

2007 Advances in Neural Networks – ISNN 2007: 4th International Symposium on Neural Networks, ISNN 2007: Proceedings, Part II 4492 1221-1230.

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Generation of simple, perfect markers for cereal quality traits, Louis MT Bradbury, Daniel LE Waters, and Robert J. Henry

2007 Plant and Animal Genomes Conference XV, Population and Conservation Genomics workshop.

The value of the Australian nutrition screening initiative for older Australians- results from a national survey, S Brownie, Stephen Myers, and J Stevens

2007 Journal of Nutrition, Health and Aging 11:1 20-25.

Genotyping of single nucleotide polymorphisms in sugarcane using mass spectrometry and CEL I polymorphism detection, Peter C. Bundock, Frances G. Eliott, Giovanni M. Cordeiro, and Robert J. Henry

2007 International Plant and Animal Genome Conference XV, International Consortium of Sugar Biotechnology Workshop.

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A quinolizidine alkaloid O-tigloyltransferase gene in wild and domesticated white lupin (Lupinus albus), Yihua Chen, L Slade Lee, and Robert J. Henry

2007 Annals of Applied Biology 151:3 357-362.

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Taxonomically significant coumarins from three Philotheca species (Rutaceae), Amina Chlouchi, Corinne Girard, Francoise Bevalot, Peter G. Waterman, and Frederic Muyard

2007 Biochemical Systematics and Ecology 35:4 251-254.

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Public health risks from heavy metals and metalloids present in traditional Chinese medicines, Kelli Cooper, Barry Noller, Des Connell, Jimmy Yu, Ross Sadler, Henry Olszowy, Gary Golding, Ujang Tinggi, Michael R. Moore, and Stephen P. Myers

2007 Journal of Toxicology and Environmental Health Part A: Current Issues 70:19 1694-1699.

Diversity in a plant defense locus in wild barley populations is strongly correlated with water availability, James K. Cronin, Peter C. Bundock, Agnelo Furtado, Robert J. Henry, and Eviatar Nevo

2007 Plant and Animal Genomes Conference XV, Population and Conservation Genomics workshop.

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Adaptive climatic molecular evolution in wild barley at the Isa defense locus, James K. Cronin, Peter C. Bundock, Robert J. Henry, and Eviatar Nevo

2007 Proceedings of the National Academy of Science of the United States of America 104:8 2773-2778.

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Adaptive climatic molecular evolution in wild barley at the Isa defense locus, James K. Cronin, Peter C. Bundock, Robert J. Henry, and Eviatar Nevo

2007 Proceedings of the National Academy of Science of the United States of America 104:8 2773-2778.

A novel detection strategy for scanning multiple mutations using CEL I mismatch cleavage and capillary electrophoresis, Michael J. Cross, Daniel LE Waters, L Slade Lee, and Robert J. Henry

2007 Plant and Animal Genomes XV Conference.

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Sorghum resolved as a distinct genus based on combined ITS1, ndhF and Adh1 analyses, Sally L. Dillon, Peter K. Lawrence, Robert J. Henry, and H James Price

2007 Plant Systematics and Evolution 268:1-4 29-43.

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Domestication to crop improvement: genetic resources for sorghum and saccharum (Andropogoneae), Sally L. Dillon, Frances M. Shapter, Robert J. Henry, Giovanni Cordeiro, Liz Izquierdo, and L Slade Lee

2007 Annals of Botany 100:5 975-989.

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Lack of functional expression of NMDA receptors in PC12 cells, Mark A. Edwards, Rhonda A. Loxley, Andrew J. Williams, Mark Connor, and Jacqueline K. Phillips

2007 NeuroToxicology 28:4 876-885.

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Investigation of the effect of conditioning on the fracture of hard and soft wheat grain by the single-kernel characterization system: a comparison with roller milling, Mark A. Edwards, Brian G. Osborne, and Robert J. Henry

2007 Journal of Cereal Science 46:1 64-74.

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Studies into the genetics of wheat endosperm rheology and microstructure, Mark A. Edwards, Brian G. Osborne, and Robert J. Henry

2007 57th Australian Cereal Chemistry Conference.

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Analysis of BAD gene expression in Oryza sativa using qRTPCR, Timothy L. Fitzgerald, Daniel LE Waters, and Robert J. Henry

2007 Plant and Animal Genomes Conference XV.

Relationship between hardness genes and quality in barley (Hordeum vulgare), Glen P. Fox, Linh Nguyen, Jan GP Bowman, David ME Poulsen, P Andrew Inkerman, and Robert J. Henry

2007 Journal of the Institute of Brewing 113 87-95.

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Measurement of genetic and environmental variation in barley (Hordeum vulgare) grain hardness, Glen P. Fox, Brian G. Osborne, Jan GP Bowman, Alison M. Kelly, Mehmet Cakir, David ME Poulsen, P Andrew Inkerman, and Robert J. Henry

2007 Journal of Cereal Science 46:1 82-92.

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Differential specificity of cereal promoters in homologous and heterologous cereals, Agnelo Furtado, Robert J. Henry, Alessandro Pellegrineschi, Fumio Takaiwa, Carl Ramage, and German Spangenberg

2007 Plant and Animal Genomes Conference XV.

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Fortification of plant folate genes in rice, Susan A. Gillies, Shane R. McIntosh, and Robert J. Henry

2007 Plant and Animal Genomes Conference XV.

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Real-time PCR detection of five different "endogenous control gene" transcripts in forensic autopsy material, Michael Heinrich, S Lutz-Bonengel, K Matt, and U Schmidt

2007 Forensic Science International: Genetics 1:2 163-169.

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Successful RNA extraction from various human postmortem tissues, Michael Heinrich, K Matt, S Lutz-Bonengel, and U Schmidt

2007 International Journal of Legal Medicine 121:2 136-142.

Application of genomics in cereal chemistry, Robert J. Henry

2007 57th Australian Cereal Chemistry Conference.

Genomics as a tool for cereal chemistry, Robert J. Henry

2007 Cereal Chemistry 84:4 365-369.

The use of cereals as biofuels, Robert J. Henry

2007 57th Australian Cereal Chemistry Conference.

Functional analysis of rice genes determining fragrance, Robert J. Henry, Louis MT Bradbury, Timothy L. Fitzgerald, Susan A. Gillies, Nigel Slater, and Daniel LE Waters

2007 5th Rice Functional Genomics Symposium.

Genomics approaches to analysis of genetic adaptation to climate in barley, Robert J. Henry, James K. Cronin, Peter C. Bundock, Agnelo Furtado, and Eviatar Nevo

2007 13th Australian Barley Technical Symposium.

Gene flow and genetic diversity in eucalypt plantations and native forest in north coast New South Wales, Megan E. Jones, Mervyn Shepherd, Robert J. Henry, Spencer Bruskin, and Angela Delves

2007 Wood Breeding, Biotechnology and Industrial Expectations Meeting.

Understanding symptomless growth of Leptosphaeria maculans in Brassica napus (oilseed rape) to manage phoma stem canker, Graham J. King

2007 12th International Rapeseed Congress.

Assessment of cytokine levels in the tears of contact lens wearers and non-contact lens wearers, C Lakkis, S Ames, Paul A. Connellan, Linda K. Banbury, and Carol A. Morris

2007 Tear Film and Ocular Surfact Society (TFOS) Conference.

Biologically active compounds. WO2007062468 Bioactive Exports Pty Ltd., patent, David N. Leach, Lesley M. Stevenson, Brigitte Gabriel, and Karen Beattie

2007.

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Elucidation of danzhixiaoyao wan and its constituent herbs on antioxidant activity and inhibition of nitric oxide production, Hui Liao, Linda K. Banbury, and David N. Leach

2007 Evidence-Based Complementary and Alternative Medicine 4:4 425-430.

Inhibitory effects of 12 hemostatic Chinese herbs on nitric oxide production in LPS-activated RAW264.7 macrophages, Hui Liao, Linda K. Banbury, and David N. Leach

2007 Journal of China Pharmacy 18:9 117-130.

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Alkylamides from echinacea modulate induced immune responses in macrophages, Anita Matthias, Linda K. Banbury, Kerry G. Penman, Lesley M. Stevenson, Kerry M. Bone, David N. Leach, and Reg P. Lehmann

2007 Immunological Investigations 36:2 117-130.

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SAGE of the developing wheat caryopsis, Shane McIntosh, Loraine Watson, Peter C. Bundock, Allison C. Crawford, Jessica F. White, Giovanni M. Cordeiro, Daniel Barbary, Lee Rooke, and Robert J. Henry

2007 Plant Biotechnology Journal 5:1 69-83.

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Cytochrome P450 inhibitory action of echinacea preparations differs widely and co-varies with alkylamide content, M Modarai, J Gertsch, A Suter, Michael Heinrich, and A Kortenkamp

2007 Journal of Pharmacy and Pharmacology 59:4 567-573.

Comparison of cytokine levels in the tears and saliva, Carol A. Morris, Paul A. Connellan, Linda K. Banbury, S Ames, and C Lakkis

2007 Tear Film and Ocular Surfact Society (TFOS) Conference.

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Clerodane diterpenes from the stems of Casearia grewiifolia var. gelonioides (Flacourtiaceae/Salicaceae sensu lato), M Ashik Mosaddik, Paul I. Forster, Ron Booth, and Peter G. Waterman

2007 Biochemical Systematics and Ecology 35:9 631-633.

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Phenolic glycosides from some Australian species of Flacourtiaceae (Salicaceae sensu lato), M Ashik Mosaddik, Paul I. Forster, Ron Booth, and Peter G. Waterman

2007 Biochemical Systematics and Ecology 35:3 166-168.

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Three new 3-benzylbenzofuran-2-one derivatives from Homalium brachybotrys (Flacourtiaceae/Salicaceae s. l.), M Ashik Mosaddik, Paul I. Forster, and Peter G. Waterman

2007 Natural Product Research 21:13 1191-1198.

Effective regulation of complementary medicines, Stephen Myers

2007 Australian Journal of Pharmacy 88:1051 58-59.

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Nuclear ribosomal pseudogenes resolve a corroborated monophyly of the eucalypt genus Corymbia despite misleading hypotheses at functional ITS paralogs, Joel W. Ochieng, Robert J. Henry, Peter R. Baverstock, Dorothy A. Steane, and Mervyn Shepherd

2007 Molecular Phylogenetics & Evolution 44:2 752-764.

Phylogenetics in plant biotechnology: principles, obstacles and oppportunities for the resource poor, Joel W. Ochieng, A WT Muigai, and G N. Ude

2007 African Journal of Biotechnology 6:6 639-649.

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Genetic control of propagation traits in a single Corymbia torelliana x Corymbia variegata family, Joel W. Ochieng, Peter Pomroy, Mark J. Dieters, and David J. Lee

2007 Canadian Journal of Forest Research 37:12 2563-2574.

Microsatellites retain phylogenetic signals across genera in eucalypts (Myrtaceae), Joel W. Ochieng, Dorothy A. Steane, P Y. Ladiges, Peter R. Baverstock, Robert J. Henry, and Mervyn Shepherd

2007 Genetics & Molecular Biology 30:4 1125-1134.

Measurement of barley grain rheology for the quality selection of breeding material, Brian G. Osborne, Glen P. Fox, Alison M. Kelly, and Robert J. Henry

2007 Journal of the Institute of Brewing and Distilling 113:2 135-141.

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Assessment of commercial milling potential of hard wheat by measurement of the rheological properties of whole grain, Brian G. Osborne, Robert J. Henry, and Michael D. Southan

2007 Journal of Cereal Science 45:2 122-127.

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Understanding gene expression in the developing grain, Toni Pacey-Miller, Loraine Watson, Jessica F. White, Shane R. McIntosh, Allison C. Crawford, Peter C. Bundock, Daniel Barbary, Giovanni M. Cordeiro, and Robert J. Henry

2007 57th Australian Cereal Chemistry Conference.

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Rapid malt - the path to faster malting barley, Toni Pacey-Miller, Jessica F. White, Peter C. Bundock, and Robert J. Henry

2007 13th Australian Barley Technical Symposium.

Unlocking the mysteries of malting using SAGE, Toni Pacey-Miller, Jessica F. White, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, Peter C. Bundock, and Robert J. Henry

2007 International Plant and Animal Genome Conference XV.

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High-throughput genotyping of barley for variety identification, Julie A. Pattemore and Robert J. Henry

2007 13th Australian Barley Technical Symposium.

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High-throughput genotyping of cereals, Julie A. Pattemore and Robert J. Henry

2007 Cereals 2007 : proceedings of 57th Australian Cereal Chemistry Conference.

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Comparative chemical analysis of the essential oil constituents in the bark, heartwood and fruits of Cryptocarya massoy (Oken) Kosterm. (Lauraceae) from Papua New Guinea, Topul Rali, Stewart W. Wossa, and David N. Leach

2007 Molecules 12 149-154.

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Volatile chemical constituents of Piper aduncum L and Piper gibbilimbum C. DC (Piperaceae) from Papua New Guinea, Topul Rali, Stewart W. Wossa, David N. Leach, and Peter G. Waterman

2007 Molecules 12 398-394.

Influence of wood density and fibre length on properties of medium density fibreboard manufactured from Pinus radiata, Carolyn A. Raymond

2007 Appita Journal: Journal of the Technical Association of the Australian and New Zealand Pulp and Paper Industry 60:3 204-208.

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Patterns of basic density variation for Pinus radiata grown in south-west slopes region of New South Wales, Australia, Carolyn A. Raymond and Bill Joe

2007 New Zealand Journal of Forestry Science 37:1 81-95.

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Relationship betweeen timber grade, static and dynamic modulus of elasticity and SilviScan properties for Pinus radiata in New South Wales, Carolyn A. Raymond, Bill Joe, Rob Evans, and Ross L. Dickson

2007 New Zealand Journal of Forestry Science 37:2 186-196.

Phosphorus and potassium accumulation by Brassica napus L., and effects of phosphorus and potassium deficiency late in the season, Z Rengel, Q Ma, J W. Bowden, and Terry J. Rose

2007 12th International Rapeseed Congress.

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Gathered food plants in the mountains of Castilla-La Mancha (Spain): ethnobotany and multivariate analysis, D Rivera, C Obón, C Inocencio, Michael Heinrich, A Verde, J Fajardo, and J A. Palazón

2007 Economic Botany 61:3 269-289.

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Differential accumulation patterns of phosphorus and potassium by canola cultivars compared to wheat, Terry J. Rose, Zed Rengel, Qifu Ma, and John W. Bowden

2007 Journal of Plant Nutrition and Soil Science 170:3 404-411.

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Detection and resolution of genetic loci affecting circadian period in Brassica oleracea, N Salathia, J R. Lynn, A J. Millar, and Graham J. King

2007 Theoretical and Applied Genetics 114:4 683-692.

Association genetics for improved solid wood quality in Blackbutt (Eucalyptus pilularis), Timothy Sexton, Robert J. Henry, Michael Henson, Helen Smith, Dane Thomas, and Mervyn Shepherd

2007 Forestry CRC Annual Meeting.

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A method for assessing arbuscular mycorrhizal fungi group distribution in tree roots by intergenic transcribed sequence variation, Mervyn Shepherd, Linh Nguyen, Megan E. Jones, J Doland Nichols, and F Lynn Carpenter

2007 Plant and Soil 290:1-2 259-268.

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Genetic control of propagation traits in a single Corymbia torelliana × Corymbia variegata family, Mervyn Shepherd, Peter Pomroy, Mark J. Dieters, and David Lee

2007 Canadian Journal of Forest Research 37:12 2563-2574.

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Identification of antibacterial constituents from the indigenous Australian medicinal plant Eremophila duttonii F. Muell. (Myoporaceae), Joshua E. Smith, David Tucker, Kenneth Watson, and Graham Jones

2007 Journal of Ethnopharmacology 112:2 386-393.

Developing a sampling strategy for measuring acoustic velocity in standing Pinus radiata using the treetap time of flight tool, Michael James Toulmin and C A. Raymond

2007 New Zealand Journal of Forestry Science 37:1 96-111.

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Enhancing cell survival of atrazine degrading Rhodococcus erythropolis NI86/21 cells encapsulated in alginate beads, Tony Vancov, K Jury, Nicole F. Rice, L Van Zwieten, and S Morris

2007 Journal of Applied Microbiology 102:1 212-220.

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Supervised exercise training combined with ginkgo biloba treatment for patients with peripheral arterial disease, Jianxiong Wang, Shi Zhou, Roger Bronks, John Graham, and Stephen Myers

2007 Clinical Rehabilitation 21:7 579-586.

Genetic manipulation of starch properties in plants: Patents 2001-2006, Daniel LE Waters and Robert J. Henry

2007 Recent Patents on Biotechnology 1:3 252-259.

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Characterisation of the malting barley transcriptome, Jessica F. White, Toni Pacey-Miller, Allison C. Crawford, Peter C. Bundock, Giovanni M. Cordeiro, and Robert J. Henry

2007 13th Australian Barley Technical Symposium.

Linnaeus turns 300... Carl Linnaeus, Hans Wohlmuth

2007 Australian Journal of Medical Herbalism 19:4 151-155.

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Antioxidant capacity of 55 medicinal herbs traditionally used to treat the urinary system: a comparison using a sequential three solvent extraction process, Ken Wojcikowski, Lesley M. Stevenson, David N. Leach, Hans Wohlmuth, and Glenda Gobe

2007 Journal of Alternative and Complementary Medicine 13:1 103-109.

Papers from 2006

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Sequence polymorphism discovery in wheat microsatellite flanking regions using pyrophosphate sequencing, Gary A. Ablett, Helen Hill, and Robert J. Henry

2006 Molecular Breeding 17:3 281-289.

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Fitness of hybrids between rapeseed (Brassica napus) and wild Brassica rapa in natural habitats, J Allainguillaume, M Alexander, JM Bullock, M Saunders, C Allender, G J. King, C Ford, and MJ Wilkinson

2006 Molecular Ecology 15:4 1175-1184.

Sucrose phosphate synthase gene family isolation and characterisation in sugarcane, Ouzi Amouyal, Robert J. Henry, Peter C. Bundock, and Giovanni M. Cordeiro

2006 Combio 2006.

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Disease-consensus index as a tool of selecting potential hypoglycemic plants in Chikindzonot, Yucatán, México, Adolfo Andrade-Cetto, Jaime Becerra-Jiméneza, Eddy Martínez-Zurita, Pilar Ortega-Larrocea, and Michael Heinrich

2006 Journal of Ethnopharmacology 107:2 199-204.

Cooking properties of rice crossbreds in relation to allelic combination of the key starch synthetic enzyme genes, Arun Aryan, Margrit Martin, Peter Snell, Russell F. Reinke, Daniel LE Waters, and Robert J. Henry

2006 56th Australian Cereal Chemistry Conference and Indian Ocean Rim Symposium.

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Splice site identification using probabilistic parameters and SVM classification, Abdul KMA Baten, B CH Chang, S K. Halgamuge, and Jason Li

2006 BMC Bioinformatics 7:suppl. 5.

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Genotyping of the fragrance allele in rice, Louis MT Bradbury, Robert J. Henry, Qingsheng Jin, Russell F. Reinke, and Daniel LE Waters

2006 Plant and Animal Genomes Conference XIV.

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Triumphalone, a diketone from the volatile oil the leaves of Melaleuca triumphalis, and its spontaneous conversion into isotriumphalone, Joseph J. Brophy, Donald C. Craig, Robert J. Goldsack, Christopher JR Fookes, David N. Leach, and Peter G. Waterman

2006 Phytochemistry 67 2085-2089.

Analysis of the triticeae seed transcriptome, Peter C. Bundock, Allison C. Crawford, Shane R. McIntosh, Jessica F. White, Lee Rooke, Toni Pacey-Miller, Daniel Barbary, Linh Nguyen, Loraine Watson, and Robert J. Henry

2006 International Triticeae Mapping Inititative (ITMI) Workshop and the Australian Centre for Plant Functional Genomics (ACPFG) Symposium.

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Using longSAGE to study cereal gene expression during grain development and germination, Peter C. Bundock, Allison C. Crawford, Jessica F. White, Shane R. McIntosh, Giovanni M. Cordeiro, Toni Pacey-Miller, Lee Rooke, Linh Nguyen, Gary A. Ablett, Loraine Watson, and Robert J. Henry

2006 Plant and Animal Genomes Conference XIV.

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Robust allele-specific polymerase chain reaction markers developed for single nucleotide polymorphisms in expressed barley sequences, Peter C. Bundock, Michael J. Cross, Frances M. Shapter, and Robert J. Henry

2006 Theoretical and Applied Genetics 112:2 358-365.

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Characterization of a quinolizidine alkaloid O-tigloyltransferase gene in wild and domestic white lupin (L. albus), Yihua Chen, L Slade Lee, and D J. Luckett

2006 Third 3rd International Conference on Legume Genomics and Genetics.

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An optimised ecotilling protocol for polyploids or pooled samples using a capillary electrophoresis system, Giovanni M. Cordeiro, Frances G. Eliott, and Robert J. Henry

2006 Analytical Biochemistry 355:1 145-147.

SNP analysis tools for functional analysis of sugarcane genes, Giovanni M. Cordeiro, Frances G. Eliott, Brett G. Kennedy, and Robert J. Henry

2006 Plant and Animal Genomes Conference XIV.

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Characterisation of single nucleotide polymorphisms in sugarcane EST’s, Giovanni M. Cordeiro, Frances G. Eliott, C Lynne McIntyre, Rosanne E. Casu, and Robert J. Henry

2006 Theoretical and Applied Genetics 113 331-343.

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Methods for SNP identification and analysis in the sugarcane genome, Giovanni M. Cordeiro, Frances G. Eliott, C Lynne McIntyre, and Robert J. Henry

2006 Tropical Crop Biotechnology Conference.

SCAMinG an efficient high through put approach to discovery and analysis of SNP for genotyping of agricultural and food species, Giovanni M. Cordeiro, Nicole F. Rice, Daniel LE Waters, Stirling Bowen, Frances G. Eliott, Stephen D. Williams, and Robert J. Henry

2006 Unlocking the Potential of Agricultural Biotechnology, Agricultural Biotechnology International Conference.

Targeting induced point mutations in specific genes in sorghum, Michael J. Cross, L Slade Lee, Liz Izquierdo, Nicole F. Rice, and Robert J. Henry

2006 Proceedings of 5th Australian Sorghum Conference.