Title

Computational data from: "Maximising recombination across macadamia populations to generate linkage maps for genome anchoring"

Chief Investigator

Nock, Catherine

Funders

Hort Innovation

Grant ID

MC15008

Grant Links

Hort Innovation

School or Research Centre

Centre for Plant Science

Lead Partner Organisation

Southern Cross University

Contact

Catherine Nock,

Centre for Plant Sciences Southern Cross University,

PO Box 157 Lismore NSW, 2480 Australia.

catherine.nock@scu.edu.au

Description

Computational files associated with the publication “Maximising recombination across macadamia populations to generate linkage maps for genome anchoring” (not yet published – further details to be provided when published).

Excel spreadsheet containing information on a series of Genetic linkage maps. Marker id, genetic position and the sequence associated with the marker for each map is provided. Visual representation of each genetic linkage map (using the program MapChart v2.3) is provided as a PDF.

Data Collection Start Date

2016

Data Collection End Date

2019

Methodology

Data generated was established by Kirsty S Langdon, Graham J King, Abdul Baten, Ramil Mauleon, Peter C Bundock, Bruce L Topp and Catherine J Nock

Leaf samples were collected by Kirsty Langdon, Catherine Nock and Asuka Kawamata from Southern Cross University and Mobashwer Alam from the University of Queensland.

A full description of the methodology is provided in “Maximising recombination across macadamia populations to generate linkage maps for genome anchoring” (not yet published – further details to be provided when published)

Coverage

Macadamia populations from Southern Cross University, Lismore and Queensland Department of Agriculture Maroochy Research Facility, Nambour and Bundaberg Research Facility, Bundaberg, Australia.

Creative Commons License

Creative Commons Attribution 4.0 License
This work is licensed under a Creative Commons Attribution 4.0 License.

FoR Code

0706

Data Processing

Single nucleotide polymorphism (SNP) and dominant markers were identified using the DArT Pty Ltd. genome complexity reduction method. Genetic linkage maps were constructed using JoinMap v5. Visual representations of each map were generated using MapChart v2.3. A complete description of the methods is provided in “Maximising recombination across macadamia populations to generate linkage maps for genome anchoring” (Langdon et al. unpublished – manuscript under review)

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